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Genoom Projecten

Systems Biology

Microbial

Seqnet Seq. based typing

Werkgroepen en verenigingen

Grappig

Fold it (vouw zelf eiwitten)

nieuws

Main Info Providers

Nucleotide Sequence Dbs

Genen

OMIM (Entrez)

Transcriptiefactoren

Genomatix
Jaspar (gecureerde motieven)
oPOSSUM (over representation)
ORegAnno Annotatie
Pazar (TF target relaties)
TransFac

Protein Sequence Dbs

Composite ProtSeq Dbs

Secundaire Protein Dbs

Structuur Classificatie Dbs

Reacties en Interacties

BIND (Biomol Interact Nw Db)
Genenetwork (Meta analysis)
IMEx (coordination)
IntAct
Reactome (curated reactions)

Ontologies

Pathways en functie

Biocyc Lower species
BioPathways Consortium
BioPAX (data standard)
BRITE (relations)
GenMapp functl data mapping
INOH Networks and Hieracrhies
KEGG
Pathguide
PathVisio our own!
Pathway Tools
PathwayAssist (through textmining)
WikiPathways

Andere instituten

DNA Microarrays

ArrayNL Dutch Platform
Imaging Research (Microarray Analysis)
MGED Intl Platform
NKI
R2 Affymetrix analyse
ServiceXS Leiden
uArray Dept Amsterdam

Proteomics

HUPO human proteome
Plasma Proteome Database
PRIDE proteomics identifications database
PSI Proteomics Standards Initiative

Specific Software

ABI viewer
Area proportional Venn's
Biodiscovery (clonetracker, imagene, genesight, genedirector)
BioMax (Pedant etc.)
BLAST
BLAT (Jim Kent's tools)
EMBOSS (.)
GCG (now from Accelrys)
Molquest van Softberry
Phred/Phrap/Consed
Phylip
Phylogeny programma's
Repeatmasker
Rosetta (Resolver and Luminator)
Spotfire DecisionSite
Staden
TM4 (o.a. TIGR MEV)

Statistics

Bioconductor
BRB ArrayTools (Excel R plugin)
CRdata (R Grid)
R project (statistics & graphics)
R Seek (Google 4 R)

Visualisatie

General Software

Adobe Acrobat Reader
Asap Utilities extra MS-Excel functionaliteit
GoodSync (backup en synchronisatie)
Graphviz Graph visualisatie
RoboForm form filler + password saver

Browser extensions

 

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